Domains checkbox ""Share document root..."
Within the Domains section of cPanel the checkbox that says "Share document root (/home/username/public_html) with 'domain.tld'" is mislabeled. If you need an addon domain that shares the same document root... then this doesn't make sense. When this box is checked, an alias domain is created instead of an addon domain.
If you have a 3rd party SSL on your main domain, alias domains will not be replaced by AutoSSL. Unchecking the box creates an addon domain instead, which can be checked by AutoSSL despite having a 3rd party SSL on the main domain. In our case, both the main domain and the desired addon domain were to share a document root. We could not figure out why the new domain was being excluded from autoSSL and lost quite a bit of time figuring it all out.
By definition, an addon domain is a separate document root with a separate domain.
AutoSSL will not replace any certificates installed from a third party unless you have the "Allow AutoSSL to replace invalid or expiring non-AutoSSL certificates." option selected in WHM >> Manage AutoSSL.
At this point, I'm going to mark this as "not planned" since it seems you're experiencing the intended behavior. If you think things are not working how they should be, please contact our support team directly so we can investigate the issue on your machine.
By definition, an addon domain is a separate document root with a separate domain.
AutoSSL will not replace any certificates installed from a third party unless you have the "Allow AutoSSL to replace invalid or expiring non-AutoSSL certificates." option selected in WHM >> Manage AutoSSL.
At this point, I'm going to mark this as "not planned" since it seems you're experiencing the intended behavior. If you think things are not working how they should be, please contact our support team directly so we can investigate the issue on your machine.
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